talk · Thursday 24 September · SAL A

Managing high-volume specimen movements in the entomological collection of Naturalis with a new type of record

Myriam van Walsum · From Cabinets to Clouds - Bridging the gap between collection- and database management

Recording time 4:01:21–4:10:59Open on Vimeo ↗

The short versionA 'lot' record linking taxa to storage units makes high-volume physical moves cheap to record and tells staff where each taxon is.

Overview

What this was about

Myriam van Walsum explained a workload problem in Naturalis's pinned insect collection (about a third of 45 million specimens, only about 10% individually digitised). Records exist mainly at drawer level, with a table of identifications per storage unit. When taxa shifted between drawers, staff had to delete and manually re-enter identifications, so moves were often not recorded. Instead of disruptive independent taxon records, Naturalis introduced a 'lot' record: specimens of the same lowest determined taxon stored in one contiguous location. It is created by migrating existing storage-unit records, so moving a taxon only means updating the lot's link. A Catalogue of Life API lookup also reduced entry errors. She asked how lots should map to Darwin Core or DwC-DP and whether GBIF or DiSSCo want such records.

Why it matters. It is a practical data-model fix for a common curation bottleneck in drawer-level digitised collections. It also raises an open standards question about publishing lot and storage-unit records.

Key ideas

In the room

  • Naturalis holds about 45 million specimens; over a third are pinned insects, only about 10% individually digitised (mostly bees).
  • The zoology/geology CMS is from a Dutch vendor not designed for natural history, so Naturalis writes its own ABCD-aligned requirements.
  • Taxonomically ordered storage creates many-to-many relationships between taxa and storage units.
  • Manual delete/re-enter of identifications caused backlog, errors and lost locations, despite a legal obligation to know where specimens are.
  • Lot definition: specimens of the same lowest determined taxon in one contiguous location; each specimen belongs to exactly one lot.
  • Lots were created by data migration from existing storage-unit records; no new digitisation was needed.
  • Catalogue of Life API integration in identifications reduced data entry errors.
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Transcript

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